I have installed client tools and successfully set up a site and transferred a file via the GUI Pragma Fortress FX.  I can see my file in the navigation pane and the admin has confirmed transfer.  I am using SSH2 certificates with no password and a specified non-default port eg 10xxx. 

I need to automate the secure copy and therefore need to get it working via command line.  Source  server is Win 2012.

Trying these commands:
C:\Program files\Pragma\Clients\scp user@server:/share/folder Filename 
returns secure connection refused

C:\Program files\Pragma\Clients\scp -v user@server:/share/folder Filename
returns
EXecuting host <server in cmd line>
User <user in cmd line>
Command scp -v -f /share/folder
Pragma Fortress SSH 5.0 SSH Protocol 2.0
Reading configuration data inC:\Users\xxxx\APpData\Roaming\config
Connect Failed 0
Secure connection refused

C:\Program files\Pragma\Clients\ssh -v user@server:/share/folder
returns
Pragma Fortress SSH 5.0 SSH Protocol 2.0
Reading configuration data inC:\Users\xxxx\APpData\Roaming\config
Connect Failed 11001
Secure connection refused

Configuration file is:
IdentityFile2 D:\Pragma\ssh2_rsa.pub
RSAAuthentication Yes
PubKeyAuthentication Yes
PasswordAUthentication No
Port 10xxx

I tried it without the config file first but no luck.

Any guidance much appreciated.  Thanks in anticipation.